Publications (pdf copies are available by email request (johnson dot daniel at ufl dot edu) or follow the links to the article)
Johnson, D.J., Magee, L., Pandit, K., Bourdon, J., Broadbent, E.N., Glenn, K., Kaddoura, Y., Machado, S., Nieves, J., Wilkinson, B.E., Almeyda Zambrano, A.M., Bohlman, S.A., 2021. Canopy tree density and species influence tree regeneration patterns and woody species diversity in a longleaf pine forest. Forest Ecology and Management 490, 119082. https://doi.org/10.1016/j.foreco.2021.119082
Liu, H., Johnson, D.J., Yang, Q., Xu, M., Ma, Z., Fang, X., Shang, Y., Wang, X., 2021. The dynamics of conspecific tree and seedling neighbors on seedling survival in a subtropical forest. Forest Ecology and Management 483, 118924. https://doi.org/10.1016/j.foreco.2021.118924
Luskin, M.S., Johnson, D.J., Ickes, K., Yao, T.L., Davies, S.J., 2021. Wildlife disturbances as a source of conspecific negative density-dependent mortality in tropical trees. Proceedings of the Royal Society B Biological Sciences 288, 20210001. https://doi.org/10.1098/rspb.2021.0001
Frazier, J.E., Sharma, A., Johnson, D.J., Andreu, M.G., Bohn, K.K., 2021. Group selection silviculture for converting pine plantations to uneven-aged stands. Forest Ecology and Management 481, 118729. https://doi.org/10.1016/j.foreco.2020.118729
Davies, S. J., et al. 2021. ForestGEO: Understanding forest diversity and dynamics through a global observatory network. Biological Conservation 253:108907.https://doi.org/10.1016/j.biocon.2020.108907
Pandit, K.; Smith, J.; Quesada, T.; Villari, C.; Johnson, D.J. Association of Recent Incidence of Foliar Disease in Pine Species in the Southeastern United States with Tree and Climate Variables. Forests 2020, 11, 1155. https://doi.org/10.3390/f11111155
Song, X., Johnson, D.J., Zhang, W., Yang, J., Asefa, M., Deng, X., Yang, X., and Cao, M. 2020 “Conspecific negative density-dependent seedling survival varies by season and topographic habitat” Oecologia https://doi.org/10.1007/s00442-020-04729-2
McDowell, N. G., C. D. Allen, K. Anderson-Teixeira, B. H. Aukema, B. Bond-Lamberty, L. Chini, J. S. Clark, M. Dietze, C. Grossiord, A. Hanbury-Brown, G. C. Hurtt, R. B. Jackson, D. J. Johnson, L. Kueppers, J. W. Lichstein, K. Ogle, B. Poulter, T. A. M. Pugh, R. Seidl, M. G. Turner, M. Uriarte, A. P. Walker, and C. Xu. 2020. Pervasive shifts in forest dynamics in a changing world. Science 368:eaaz9463.
Menge, D. N. L. et al. 2019. Patterns of nitrogen-fixing tree abundance in forests across Asia and America. Journal of Ecology 107:2598-2610.
Massoud, E. C. et al. 2019. Identification of key parameters controlling demographically structured vegetation dynamics in a land surface model: CLM4. 5 (FATES). Geoscientific Model Development 12:4133-4164.
Crawford, K. M., et al. 2019. When and where plant-soil feedback may promote plant coexistence: a meta-analysis. Ecology Letters 22:1274-1284.
Johnson, D.J. et al 2018. "Climate sensitive size-dependent survival in tropical trees" Nature Ecology and Evolution
pdf
Hu, Y.-H., D. J. Johnson, X.-C. Mi, X.-G. Wang, W.-H. Ye, Y.-D. Li, J.-Y. Lian, and M. Cao. The relative importance of space compared to topography increases from rare to common tree species across latitude. Journal of Biogeography pdf
Eppinga, M.B., Baudena, M., Johnson, D.J., Jiang, J., Mack, K.M.L, Strand, A.E., Bever, J.D. 2018 “Frequency-dependent feedback and plant community coexistence” Nature Ecology and Evolution
pdf
Powell, T., Kueppers, L., Koven, C., Faybishenko, B., Fisher, R., Johnson, D.J., Knox, R., McDowell, N., Condit, R., Hubbell, S. Wright, S.J., Chambers, J. 2018 “Variation in hydroclimate sustains tropical forest biomass and promotes functional diversity” New Phytologist
Hu, Z., Michaletz, S.T., Johnson, D.J., McDowell, N.G., Huang, Z., Zhou, X., Xu, C. 2018 “Traits drive global wood decomposition more than climate” Global Change Biology
Song, X., Johnson, D.J., Cao, M., Umaña, N.M., Deng, X., Yang, X., Zhang, W. Yang, J. 2018 “The strength of density-dependent mortality is contingent on climate and seedling size” Journal of Vegetation Science
Lutz, J.; Furnis, T.; Johnson, D.J.; (97 co-authors). 2018 “Global importance of large-diameter trees” Global Ecology and Biogeography.
Craig, M.E., Turner, B.L., Liang, C., Clay, K., Johnson, D.J., Phillips, R.P. 2018 “Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter” Global Change Biology
McDowell, N., et al. (1 of 36 coauthors). 2018 “Tansley review: Drivers and mechanisms of tree mortality in moist tropical forests”. New Phytologist
Johnson, D.J., Condit, R., Hubbell, S.P., Comita, L.S. 2017. Abiotic niche partitioning and negative density dependence drive tree seedling survival in a tropical forest. Proceedings of the Royal Society B.
Johnson, D.J., K. Clay, R. Phillips. 2017. Mycorrhizal associations and the spatial structure of an old-growth forest community. Oecologia
LaManna et al. 2017 "Plant diversity increases with the strength of negative density dependence at the global scale" Science
Umana, M.N., Mi, X., Cao, M., Enquist, B., Hao, R.W., Iida, Y., Johnson, D.J., Lin, L., Liu, X., Ma, K., Sun, I., Thompson, J., Uriarte, M. Wang, X., Wolf, A., Zimmerman, J.K., Swenson, N.G. 2017 “The importance of functional uniqueness, spatial aggregation and habitat preference for patterns of rarity in tree communities worldwide” Global Ecology and Biogeography
Hu, Z., Xu, C., McDowell, N., Johnson, D.J., Wang, M., Luo, Y., Zhou, X., Huang, Z. 2017 “Linking microbial community composition to C loss rates during wood decomposition” Soil Biology and Biochemistry 104:108-116
Lin, Y, Comita, L, Johnson, DJ, Chen, M, and Wu, S. 2017 "Biotic vs abiotic drivers of seedling persistence in a tropical karst forest" Journal of Vegetation Science 28(1) 206-217.
Fisher, J.B., Sweeney, S., Brzostek, E.R., Evans, T.P., Johnson, D.J., Myers, J.A., Bourg, N.A., Wolf, A.T., Howe, R.W., Phillips, R.P., 2016 "Tree-mycorrhizal associations detected remotely from canopy spectral properties" Global Change Biology.
Lu, J., Johnson, D.J., Qiao, X., Lu, Z., Wang, Q., Jiang, M. 2015 "Density dependence and habitat preference shape seedling survival in a subtropical forest in central China" Journal of Plant Ecology.
Johnson, D.J., Flory, S.L., Shelton, A., Huebner, C., Clay, K. 2015 “Interactive effects of the non-native invasive grass Microstegium vimineum and herbivore exclusion on experimental tree regeneration under differing forest management” Journal of Applied Ecology 52(1): 210-219.
Johnson, D. J., Bourg, N.A., Howe, R., McShea, W.J., Wolf, A., Clay, K. 2014 “Conspecific negative dependent mortality and the structure of temperate forests” Ecology 93: 2493-2503.
Anderson-Teixeira, K. et al. (1 of 107 authors) 2014. “CTFS-Forest GEO: a worldwide network monitoring forests in an era of global change” Global Change Biology, DOI: 10.111/gcb.12712
Réjou-Méchain, M. et al. (1 of 66 authors) 2014.”Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks” Biogeosciences Discussions, 11(4): 5711-5742.
Brzostek, E., Dragoni, D., Schmidt, H., Rahman, F. Sims, D., Wayson, C., Johnson, D.J., Phillips, R.P. 2014 “Chronic water stress reduces tree growth and carbon sink of deciduous hardwood forests” Global Change Biology.
Hobbs, F.C., Johnson, D., Kearns, K. 2013 “An incremental approach to teaching phylogenetic analysis” CBE Life Sciences Education 12:676-686.
Woodall, C., Westfall, J., Zhu, K., Johnson, D., 2013. “Assessing the effect of snow/water obstructions on the measurement of tree seedlings in a large-scale temperate forest inventory.” Forestry.
Johnson, D. J., W. T. Beaulieu, J. D. Bever, and K. Clay. 2012. Response to Comment on “Conspecific Negative Density Dependence and Forest Diversity”. Science 388: 469.
Reinhart, K. O., D. Johnson, and K. Clay. 2012. "Conspecific Plant-Soil Feedbacks of Temperate Tree Species in the Southern Appalachians, USA." PLoS ONE 7:e40680.
Johnson, D. J., W. T. Beaulieu, J. D. Bever, and K. Clay. 2012. "Conspecific Negative Density Dependence and Forest Diversity." Science 336:904-907.
Reinhart, K. O., D. Johnson, and K. Clay. 2012. Effects of trees on their recruits in the southern Appalachians, USA. Forest Ecology and Management 263:268-274.
Woodall, C.W., D. Johnson, J. Gallion, C. Perry, B. Butler, R. Piva, E. Jepsen, D. Nowak, and P. Marshall. 2005. The State of Indiana’s Forests 2003. Reource Bulletin NC-253. Part A. St. Paul, MN: U.S. Department of Agriculture, Forest Service, North Central Research Station. 95 p.
Johnson, D.J., Magee, L., Pandit, K., Bourdon, J., Broadbent, E.N., Glenn, K., Kaddoura, Y., Machado, S., Nieves, J., Wilkinson, B.E., Almeyda Zambrano, A.M., Bohlman, S.A., 2021. Canopy tree density and species influence tree regeneration patterns and woody species diversity in a longleaf pine forest. Forest Ecology and Management 490, 119082. https://doi.org/10.1016/j.foreco.2021.119082
Liu, H., Johnson, D.J., Yang, Q., Xu, M., Ma, Z., Fang, X., Shang, Y., Wang, X., 2021. The dynamics of conspecific tree and seedling neighbors on seedling survival in a subtropical forest. Forest Ecology and Management 483, 118924. https://doi.org/10.1016/j.foreco.2021.118924
Luskin, M.S., Johnson, D.J., Ickes, K., Yao, T.L., Davies, S.J., 2021. Wildlife disturbances as a source of conspecific negative density-dependent mortality in tropical trees. Proceedings of the Royal Society B Biological Sciences 288, 20210001. https://doi.org/10.1098/rspb.2021.0001
Frazier, J.E., Sharma, A., Johnson, D.J., Andreu, M.G., Bohn, K.K., 2021. Group selection silviculture for converting pine plantations to uneven-aged stands. Forest Ecology and Management 481, 118729. https://doi.org/10.1016/j.foreco.2020.118729
Davies, S. J., et al. 2021. ForestGEO: Understanding forest diversity and dynamics through a global observatory network. Biological Conservation 253:108907.https://doi.org/10.1016/j.biocon.2020.108907
Pandit, K.; Smith, J.; Quesada, T.; Villari, C.; Johnson, D.J. Association of Recent Incidence of Foliar Disease in Pine Species in the Southeastern United States with Tree and Climate Variables. Forests 2020, 11, 1155. https://doi.org/10.3390/f11111155
Song, X., Johnson, D.J., Zhang, W., Yang, J., Asefa, M., Deng, X., Yang, X., and Cao, M. 2020 “Conspecific negative density-dependent seedling survival varies by season and topographic habitat” Oecologia https://doi.org/10.1007/s00442-020-04729-2
McDowell, N. G., C. D. Allen, K. Anderson-Teixeira, B. H. Aukema, B. Bond-Lamberty, L. Chini, J. S. Clark, M. Dietze, C. Grossiord, A. Hanbury-Brown, G. C. Hurtt, R. B. Jackson, D. J. Johnson, L. Kueppers, J. W. Lichstein, K. Ogle, B. Poulter, T. A. M. Pugh, R. Seidl, M. G. Turner, M. Uriarte, A. P. Walker, and C. Xu. 2020. Pervasive shifts in forest dynamics in a changing world. Science 368:eaaz9463.
Menge, D. N. L. et al. 2019. Patterns of nitrogen-fixing tree abundance in forests across Asia and America. Journal of Ecology 107:2598-2610.
Massoud, E. C. et al. 2019. Identification of key parameters controlling demographically structured vegetation dynamics in a land surface model: CLM4. 5 (FATES). Geoscientific Model Development 12:4133-4164.
Crawford, K. M., et al. 2019. When and where plant-soil feedback may promote plant coexistence: a meta-analysis. Ecology Letters 22:1274-1284.
Johnson, D.J. et al 2018. "Climate sensitive size-dependent survival in tropical trees" Nature Ecology and Evolution
Hu, Y.-H., D. J. Johnson, X.-C. Mi, X.-G. Wang, W.-H. Ye, Y.-D. Li, J.-Y. Lian, and M. Cao. The relative importance of space compared to topography increases from rare to common tree species across latitude. Journal of Biogeography pdf
Eppinga, M.B., Baudena, M., Johnson, D.J., Jiang, J., Mack, K.M.L, Strand, A.E., Bever, J.D. 2018 “Frequency-dependent feedback and plant community coexistence” Nature Ecology and Evolution
Powell, T., Kueppers, L., Koven, C., Faybishenko, B., Fisher, R., Johnson, D.J., Knox, R., McDowell, N., Condit, R., Hubbell, S. Wright, S.J., Chambers, J. 2018 “Variation in hydroclimate sustains tropical forest biomass and promotes functional diversity” New Phytologist
Hu, Z., Michaletz, S.T., Johnson, D.J., McDowell, N.G., Huang, Z., Zhou, X., Xu, C. 2018 “Traits drive global wood decomposition more than climate” Global Change Biology
Song, X., Johnson, D.J., Cao, M., Umaña, N.M., Deng, X., Yang, X., Zhang, W. Yang, J. 2018 “The strength of density-dependent mortality is contingent on climate and seedling size” Journal of Vegetation Science
Lutz, J.; Furnis, T.; Johnson, D.J.; (97 co-authors). 2018 “Global importance of large-diameter trees” Global Ecology and Biogeography.
Craig, M.E., Turner, B.L., Liang, C., Clay, K., Johnson, D.J., Phillips, R.P. 2018 “Tree mycorrhizal type predicts within-site variability in the storage and distribution of soil organic matter” Global Change Biology
McDowell, N., et al. (1 of 36 coauthors). 2018 “Tansley review: Drivers and mechanisms of tree mortality in moist tropical forests”. New Phytologist
Johnson, D.J., Condit, R., Hubbell, S.P., Comita, L.S. 2017. Abiotic niche partitioning and negative density dependence drive tree seedling survival in a tropical forest. Proceedings of the Royal Society B.
Johnson, D.J., K. Clay, R. Phillips. 2017. Mycorrhizal associations and the spatial structure of an old-growth forest community. Oecologia
LaManna et al. 2017 "Plant diversity increases with the strength of negative density dependence at the global scale" Science
Umana, M.N., Mi, X., Cao, M., Enquist, B., Hao, R.W., Iida, Y., Johnson, D.J., Lin, L., Liu, X., Ma, K., Sun, I., Thompson, J., Uriarte, M. Wang, X., Wolf, A., Zimmerman, J.K., Swenson, N.G. 2017 “The importance of functional uniqueness, spatial aggregation and habitat preference for patterns of rarity in tree communities worldwide” Global Ecology and Biogeography
Hu, Z., Xu, C., McDowell, N., Johnson, D.J., Wang, M., Luo, Y., Zhou, X., Huang, Z. 2017 “Linking microbial community composition to C loss rates during wood decomposition” Soil Biology and Biochemistry 104:108-116
Lin, Y, Comita, L, Johnson, DJ, Chen, M, and Wu, S. 2017 "Biotic vs abiotic drivers of seedling persistence in a tropical karst forest" Journal of Vegetation Science 28(1) 206-217.
Fisher, J.B., Sweeney, S., Brzostek, E.R., Evans, T.P., Johnson, D.J., Myers, J.A., Bourg, N.A., Wolf, A.T., Howe, R.W., Phillips, R.P., 2016 "Tree-mycorrhizal associations detected remotely from canopy spectral properties" Global Change Biology.
Lu, J., Johnson, D.J., Qiao, X., Lu, Z., Wang, Q., Jiang, M. 2015 "Density dependence and habitat preference shape seedling survival in a subtropical forest in central China" Journal of Plant Ecology.
Johnson, D.J., Flory, S.L., Shelton, A., Huebner, C., Clay, K. 2015 “Interactive effects of the non-native invasive grass Microstegium vimineum and herbivore exclusion on experimental tree regeneration under differing forest management” Journal of Applied Ecology 52(1): 210-219.
Johnson, D. J., Bourg, N.A., Howe, R., McShea, W.J., Wolf, A., Clay, K. 2014 “Conspecific negative dependent mortality and the structure of temperate forests” Ecology 93: 2493-2503.
Anderson-Teixeira, K. et al. (1 of 107 authors) 2014. “CTFS-Forest GEO: a worldwide network monitoring forests in an era of global change” Global Change Biology, DOI: 10.111/gcb.12712
Réjou-Méchain, M. et al. (1 of 66 authors) 2014.”Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks” Biogeosciences Discussions, 11(4): 5711-5742.
Brzostek, E., Dragoni, D., Schmidt, H., Rahman, F. Sims, D., Wayson, C., Johnson, D.J., Phillips, R.P. 2014 “Chronic water stress reduces tree growth and carbon sink of deciduous hardwood forests” Global Change Biology.
Hobbs, F.C., Johnson, D., Kearns, K. 2013 “An incremental approach to teaching phylogenetic analysis” CBE Life Sciences Education 12:676-686.
Woodall, C., Westfall, J., Zhu, K., Johnson, D., 2013. “Assessing the effect of snow/water obstructions on the measurement of tree seedlings in a large-scale temperate forest inventory.” Forestry.
Johnson, D. J., W. T. Beaulieu, J. D. Bever, and K. Clay. 2012. Response to Comment on “Conspecific Negative Density Dependence and Forest Diversity”. Science 388: 469.
Reinhart, K. O., D. Johnson, and K. Clay. 2012. "Conspecific Plant-Soil Feedbacks of Temperate Tree Species in the Southern Appalachians, USA." PLoS ONE 7:e40680.
Johnson, D. J., W. T. Beaulieu, J. D. Bever, and K. Clay. 2012. "Conspecific Negative Density Dependence and Forest Diversity." Science 336:904-907.
Reinhart, K. O., D. Johnson, and K. Clay. 2012. Effects of trees on their recruits in the southern Appalachians, USA. Forest Ecology and Management 263:268-274.
Woodall, C.W., D. Johnson, J. Gallion, C. Perry, B. Butler, R. Piva, E. Jepsen, D. Nowak, and P. Marshall. 2005. The State of Indiana’s Forests 2003. Reource Bulletin NC-253. Part A. St. Paul, MN: U.S. Department of Agriculture, Forest Service, North Central Research Station. 95 p.
Word cloud from my PhD dissertation.